Experiment: 9T4I

X-RAY DIFFRACTION

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5	289	Protein: 20mg/mL IP6: 5mM Precipitant conditions: 26% PEG 6K, 0.1M NaOAc pH 5, 0.2M LiCl Ratio: 1:1

Crystal Properties
Matthews coefficient	Solvent content
2.6	53.4

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 9M		2023-04-06	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID23-2	0.87313	ESRF	ID23-2

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.4	39.47	94.1	0.04	0.99	11.1	12.6		28543			13.9

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.4	1.51			0.483	0.673	1.4

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	FREE R-VALUE	1.408	39.47	28541	1379	80.997	0.172	0.1695	0.1695	0.2113	0.2113	16.493

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.132			0.109		0.023

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.997
r_dihedral_angle_3_deg	13.349
r_dihedral_angle_2_deg	8.851
r_lrange_it	7.259
r_lrange_other	6.972
r_dihedral_angle_1_deg	6.479
r_scangle_it	4.853
r_scangle_other	4.851
r_scbond_it	3.119
r_scbond_other	3.118

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.997
r_dihedral_angle_3_deg	13.349
r_dihedral_angle_2_deg	8.851
r_lrange_it	7.259
r_lrange_other	6.972
r_dihedral_angle_1_deg	6.479
r_scangle_it	4.853
r_scangle_other	4.851
r_scbond_it	3.119
r_scbond_other	3.118
r_mcangle_it	2.976
r_mcangle_other	2.974
r_angle_refined_deg	1.9
r_mcbond_other	1.897
r_mcbond_it	1.896
r_angle_other_deg	0.651
r_symmetry_nbd_refined	0.274
r_symmetry_xyhbond_nbd_refined	0.242
r_nbd_other	0.238
r_xyhbond_nbd_refined	0.216
r_nbd_refined	0.205
r_symmetry_nbd_other	0.188
r_nbtor_refined	0.175
r_chiral_restr	0.091
r_symmetry_nbtor_other	0.083
r_xyhbond_nbd_other	0.037
r_symmetry_xyhbond_nbd_other	0.019
r_bond_refined_d	0.01
r_gen_planes_refined	0.009
r_metal_ion_refined	0.008
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1174
Nucleic Acid Atoms
Solvent Atoms	215
Heterogen Atoms	47

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9T4I | pdb_00009t4i