Experiment: 9T4A

X-RAY DIFFRACTION

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5	289	Protein: 20.4 mg/mL PCP-IP8: 10mM Precipitant condition: 26% PEG 6K, 0.1M NaOAc pH 5, 0.2M LiCl, 10mM MgCl2 Ratio: 1:1

Crystal Properties
Matthews coefficient	Solvent content
2.6	53.7

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2023-06-09	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALBA BEAMLINE XALOC	0.97926	ALBA	XALOC

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.69	50.02	100	0.02	0.99	20.6	12.9		20308			26.9

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.69	1.726			0.34	0.86	2.2

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	FREE R-VALUE	1.697	50.02	20308	1011	99.946	0.172	0.1699	0.1841	0.21	0.2209	29.058

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.647			-2.06		2.708

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.259
r_dihedral_angle_3_deg	14.637
r_dihedral_angle_2_deg	10.544
r_lrange_it	8.749
r_lrange_other	8.693
r_scangle_it	6.702
r_scangle_other	6.651
r_dihedral_angle_1_deg	6.314
r_scbond_it	4.222
r_scbond_other	4.192

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.259
r_dihedral_angle_3_deg	14.637
r_dihedral_angle_2_deg	10.544
r_lrange_it	8.749
r_lrange_other	8.693
r_scangle_it	6.702
r_scangle_other	6.651
r_dihedral_angle_1_deg	6.314
r_scbond_it	4.222
r_scbond_other	4.192
r_mcangle_it	3.677
r_mcangle_other	3.675
r_mcbond_it	2.639
r_mcbond_other	2.638
r_angle_refined_deg	1.756
r_angle_other_deg	0.603
r_metal_ion_refined	0.323
r_symmetry_nbd_refined	0.26
r_nbd_refined	0.211
r_nbd_other	0.206
r_symmetry_xyhbond_nbd_refined	0.202
r_symmetry_nbd_other	0.189
r_symmetry_xyhbond_nbd_other	0.189
r_xyhbond_nbd_refined	0.179
r_nbtor_refined	0.177
r_chiral_restr	0.098
r_symmetry_nbtor_other	0.082
r_xyhbond_nbd_other	0.02
r_bond_refined_d	0.009
r_gen_planes_refined	0.007
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1202
Nucleic Acid Atoms
Solvent Atoms	168
Heterogen Atoms	62

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9T4A | pdb_00009t4a