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Type III polyketide synthase from Hypoxylon argillaceum CBS527.63
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3E1H
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.1 M HEPES (pH 7.5), 6% (w/v) PEG8000
Crystal Properties Matthews coefficient Solvent content 2.29 46.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.328 α = 78.169 b = 68.41 β = 78.905 c = 94.23 γ = 66.68
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-10-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.033210 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 45.76 91.8 0.997 11.3 3.8 81536
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 0.892
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.1 43.15 81536 4044 91.761 0.189 0.1865 0.1863 0.2433 0.2419 47.588
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.5 -1.221 0.621 0.619 -1.125 -1.347
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.729 r_dihedral_angle_6_deg 15.921 r_lrange_other 9.982 r_lrange_it 9.98 r_dihedral_angle_2_deg 9.27 r_dihedral_angle_1_deg 8.507 r_scangle_it 8.142 r_scangle_other 8.141 r_mcangle_it 6.407 r_mcangle_other 6.407
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.729 r_dihedral_angle_6_deg 15.921 r_lrange_other 9.982 r_lrange_it 9.98 r_dihedral_angle_2_deg 9.27 r_dihedral_angle_1_deg 8.507 r_scangle_it 8.142 r_scangle_other 8.141 r_mcangle_it 6.407 r_mcangle_other 6.407 r_scbond_it 5.598 r_scbond_other 5.597 r_mcbond_it 4.716 r_mcbond_other 4.715 r_angle_refined_deg 1.937 r_angle_other_deg 0.65 r_nbd_refined 0.231 r_symmetry_nbd_other 0.196 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.169 r_symmetry_nbd_refined 0.148 r_nbd_other 0.148 r_chiral_restr 0.094 r_symmetry_nbtor_other 0.088 r_symmetry_xyhbond_nbd_refined 0.039 r_symmetry_xyhbond_nbd_other 0.016 r_bond_refined_d 0.009 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10964 Nucleic Acid Atoms Solvent Atoms 127 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing