☰ Navigation Tabs
yeast core m6A Methyltransferase Complex (ycMTC) bound to mRNA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other
Refinement RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 25.528 r_long_range_B_other 25.528 r_scangle_other 15.85 r_dihedral_angle_3_deg 13.953 r_mcangle_it 11.791 r_mcangle_other 11.791 r_scbond_it 9.234 r_scbond_other 9.234 r_mcbond_it 7.124 r_mcbond_other 7.123
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 25.528 r_long_range_B_other 25.528 r_scangle_other 15.85 r_dihedral_angle_3_deg 13.953 r_mcangle_it 11.791 r_mcangle_other 11.791 r_scbond_it 9.234 r_scbond_other 9.234 r_mcbond_it 7.124 r_mcbond_other 7.123 r_dihedral_angle_1_deg 5.111 r_dihedral_angle_2_deg 2.73 r_angle_refined_deg 1.349 r_angle_other_deg 0.421 r_chiral_restr 0.066 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_gen_planes_other 0.001 r_bond_other_d r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample yeast core m6A Methyltransferase Complex bound to substrate mRNA Sample Components 27-mer probe from Rec8 mRNA in Saccharomyces cerevisiae yeast core m6A Methyltransferase Complex
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 120580 Reported Resolution (Å) 2.69 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 1500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 165000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.5 MODEL REFINEMENT REFMAC 5.8.0419 CTF CORRECTION cryoSPARC 4.5 INITIAL EULER ASSIGNMENT cryoSPARC 4.5 FINAL EULER ASSIGNMENT cryoSPARC 4.5 CLASSIFICATION cryoSPARC 4.5 RECONSTRUCTION cryoSPARC 4.5
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION