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WspR response regulator with crystallization epitope mutations G306D:G308D
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3I5B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293.15 0.2M lithium sulfate
25% PEG3350
0.1M bis-tris pH 6.5
Crystal Properties Matthews coefficient Solvent content 1.77 30.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.12 α = 90 b = 45.4 β = 90 c = 85.23 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2015-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91739 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 42.615 89.6 0.021 20.5 5.7 37725
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.23 0.829
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.33 42.615 30751 1504 98.605 0.166 0.1639 0.1638 0.2133 0.2131 17.801
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.41 -0.035 0.445
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.453 r_lrange_it 13.309 r_lrange_other 12.931 r_dihedral_angle_3_deg 11.558 r_scangle_it 9.886 r_scangle_other 9.886 r_scbond_it 7.019 r_scbond_other 7.015 r_dihedral_angle_2_deg 6.751 r_mcangle_other 6.549
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.453 r_lrange_it 13.309 r_lrange_other 12.931 r_dihedral_angle_3_deg 11.558 r_scangle_it 9.886 r_scangle_other 9.886 r_scbond_it 7.019 r_scbond_other 7.015 r_dihedral_angle_2_deg 6.751 r_mcangle_other 6.549 r_mcangle_it 6.543 r_dihedral_angle_1_deg 6.133 r_mcbond_it 4.661 r_mcbond_other 4.628 r_rigid_bond_restr 3.778 r_angle_refined_deg 1.801 r_angle_other_deg 0.771 r_nbd_refined 0.234 r_nbd_other 0.194 r_symmetry_nbd_other 0.172 r_nbtor_refined 0.166 r_symmetry_nbd_refined 0.157 r_xyhbond_nbd_refined 0.133 r_symmetry_xyhbond_nbd_refined 0.128 r_chiral_restr 0.098 r_symmetry_nbtor_other 0.072 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_gen_planes_other 0.004 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1304 Nucleic Acid Atoms Solvent Atoms 74 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing