☰ Navigation Tabs
The ternary complex of human sirt6, ADPr and small molecule activator.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.83 293 PEG400, AmSO4, BisTris
Crystal Properties Matthews coefficient Solvent content 2.63 53.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.172 α = 114.59 b = 90.362 β = 112.36 c = 90.249 γ = 93.44
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X CdTe 16M 2025-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX IV BEAMLINE BioMAX 0.72932 MAX IV BioMAX
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.858 79.35 46.5 0.172 0.202 0.106 0.974 3.9 3.6 76535
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.858 2.191 6 0.775 0.908 0.471 0.511 1.5 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.86 79.35 72672 3863 46.46 0.20441 0.20226 0.206 0.24525 0.2466 RANDOM 27.363
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 0.16 0.1 -0.13 0.03 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.815 r_long_range_B_refined 9.381 r_long_range_B_other 9.381 r_dihedral_angle_2_deg 7.16 r_dihedral_angle_1_deg 5.574 r_scangle_other 5.105 r_mcangle_it 3.743 r_mcangle_other 3.743 r_scbond_it 3.064 r_scbond_other 3.064
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.815 r_long_range_B_refined 9.381 r_long_range_B_other 9.381 r_dihedral_angle_2_deg 7.16 r_dihedral_angle_1_deg 5.574 r_scangle_other 5.105 r_mcangle_it 3.743 r_mcangle_other 3.743 r_scbond_it 3.064 r_scbond_other 3.064 r_mcbond_it 2.277 r_mcbond_other 2.271 r_angle_refined_deg 1.499 r_angle_other_deg 0.52 r_chiral_restr 0.082 r_gen_planes_refined 0.007 r_bond_refined_d 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13844 Nucleic Acid Atoms Solvent Atoms 827 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement STARANISO data scaling XDS data reduction PHASER phasing PDB_EXTRACT data extraction