☰ Navigation Tabs
Structure of the Diels-Alderase ChlE3 in complex with cofactor FAD
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5XGV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293.15 0.2 M Lithium chloride, 0.1 M Tris-HCl, pH 8, 20% w/v PEG 6000
Crystal Properties Matthews coefficient Solvent content 2.8 56.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 191.87 α = 90 b = 69.76 β = 109.37 c = 188.72 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2023-07-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.99987 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 90.669 100 0.996 8.2 6.6 204156
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.84 1.87 100 0.322 0.7 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.84 90.669 204156 10262 99.947 0.185 0.1831 0.1826 0.2226 0.2221 54.318
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.717 0.529 1.556 -0.971
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.841 r_dihedral_angle_3_deg 14.256 r_dihedral_angle_2_deg 12.181 r_lrange_other 8.714 r_lrange_it 8.707 r_scangle_it 7.377 r_scangle_other 7.377 r_dihedral_angle_1_deg 7.224 r_scbond_other 5.313 r_scbond_it 5.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.841 r_dihedral_angle_3_deg 14.256 r_dihedral_angle_2_deg 12.181 r_lrange_other 8.714 r_lrange_it 8.707 r_scangle_it 7.377 r_scangle_other 7.377 r_dihedral_angle_1_deg 7.224 r_scbond_other 5.313 r_scbond_it 5.312 r_mcangle_other 5.04 r_mcangle_it 5.039 r_mcbond_it 3.847 r_mcbond_other 3.847 r_angle_refined_deg 2.348 r_angle_other_deg 0.797 r_symmetry_nbd_refined 0.255 r_dihedral_angle_other_2_deg 0.23 r_nbd_refined 0.222 r_nbd_other 0.198 r_symmetry_nbd_other 0.196 r_symmetry_xyhbond_nbd_refined 0.188 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.172 r_chiral_restr 0.115 r_symmetry_nbtor_other 0.089 r_symmetry_xyhbond_nbd_other 0.071 r_bond_refined_d 0.015 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14288 Nucleic Acid Atoms Solvent Atoms 502 Heterogen Atoms 212
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing