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helical Aurein 3.3, hP form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model Other Arcimboldo
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6.5 293 200mM MgCl2, 100 mM NaCacodylate pH 6.5, 50% PEG 200 under 3:1 parrafin : silicone oil
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.02 α = 90 b = 63.02 β = 90 c = 41.49 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL Bruker PHOTON II 2025-05-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE BRUKER D8 VENTURE 0.71073
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 22.799 99.65 0.107 0.129 0.997 5.91 3 17128 19.05
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.98 98.75 1.191 0.162 0.79 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.8 22.799 5689 580 99.615 0.223 0.221 0.2213 0.2459 0.2451 23.474
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.095 -0.047 -0.095 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 22.279 r_dihedral_angle_3_deg 14.878 r_lrange_it 5.649 r_lrange_other 5.56 r_dihedral_angle_1_deg 4.712 r_scangle_it 4.16 r_scangle_other 4.152 r_scbond_it 2.862 r_scbond_other 2.854 r_mcangle_it 1.739
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 22.279 r_dihedral_angle_3_deg 14.878 r_lrange_it 5.649 r_lrange_other 5.56 r_dihedral_angle_1_deg 4.712 r_scangle_it 4.16 r_scangle_other 4.152 r_scbond_it 2.862 r_scbond_other 2.854 r_mcangle_it 1.739 r_mcangle_other 1.737 r_mcbond_it 1.198 r_angle_refined_deg 1.195 r_mcbond_other 1.184 r_xyhbond_nbd_refined 0.285 r_angle_other_deg 0.249 r_nbd_refined 0.249 r_symmetry_nbd_other 0.196 r_nbtor_refined 0.19 r_symmetry_nbd_refined 0.172 r_nbd_other 0.146 r_symmetry_xyhbond_nbd_refined 0.104 r_ncsr_local_group_1 0.1 r_metal_ion_refined 0.081 r_symmetry_nbtor_other 0.073 r_chiral_restr 0.04 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 254 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms 81
Software Software Software Name Purpose REFMAC refinement DIALS data reduction XDS data reduction STARANISO data scaling Arcimboldo phasing