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Human galactosyltransferase B3GalT6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 5.6 293 20% (w/v) PEG 4000, 20% (v/v) isopropanol, 0.1 M sodium citrate
Crystal Properties Matthews coefficient Solvent content 2.6 52.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.25 α = 90 b = 77.46 β = 90 c = 151.08 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-03-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 1.006364 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 50 99.3 0.1 0.998 7 3.87 208815 19.747
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.27 98.2 2.796 0.193 0.41 3.53
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.2 47.06 106950 1135 99.61 0.16833 0.16796 0.21 0.20245 0.2297 RANDOM 12.682
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.51 0.71 -3.22
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 13.69 r_dihedral_angle_3_deg 13.112 r_long_range_B_other 12.875 r_dihedral_angle_2_deg 11.255 r_dihedral_angle_1_deg 6.89 r_scangle_other 6.195 r_mcangle_it 5.248 r_mcangle_other 5.246 r_rigid_bond_restr 4.237 r_scbond_other 4.177
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 13.69 r_dihedral_angle_3_deg 13.112 r_long_range_B_other 12.875 r_dihedral_angle_2_deg 11.255 r_dihedral_angle_1_deg 6.89 r_scangle_other 6.195 r_mcangle_it 5.248 r_mcangle_other 5.246 r_rigid_bond_restr 4.237 r_scbond_other 4.177 r_scbond_it 4.175 r_mcbond_it 3.501 r_mcbond_other 3.499 r_angle_refined_deg 1.874 r_angle_other_deg 0.679 r_chiral_restr 0.101 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2222 Nucleic Acid Atoms Solvent Atoms 373 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XDS data scaling PHASER phasing