Experiment: 9SN7

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5F07

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	MICROBATCH		277	Precipitating solution : - 25 % w/v PEG 4000 - 100 mM MES pH 6.5 - 200 mM MgCl2 Protein solution : 10mg/ml protein in 20 mM Tris pH 8.0 - 5mM DTT - 10mM L-Cystein - 2.1mM Quercetin

Crystal Properties
Matthews coefficient	Solvent content
2.43	49.38

Symmetry
Space Group	C 1 2 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2023-04-26	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE BM07	0.979510	ESRF	BM07

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.4	47.63	95.5	0.027	1	22.6	3.7		43970			13.8

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.4	1.42	76.5		0.913		2.7

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.4	47.629	43948	2267	95.5	0.144	0.1424	0.1424	0.1724	0.1724	22.138

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.035		0.612	-1.193		0.318

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.299
r_lrange_it	13.648
r_dihedral_angle_3_deg	12.357
r_scangle_it	11.575
r_mcangle_it	8.605
r_scbond_it	8.426
r_dihedral_angle_2_deg	8.01
r_mcbond_it	6.196
r_dihedral_angle_1_deg	5.661
r_rigid_bond_restr	5.485

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.299
r_lrange_it	13.648
r_dihedral_angle_3_deg	12.357
r_scangle_it	11.575
r_mcangle_it	8.605
r_scbond_it	8.426
r_dihedral_angle_2_deg	8.01
r_mcbond_it	6.196
r_dihedral_angle_1_deg	5.661
r_rigid_bond_restr	5.485
r_angle_refined_deg	1.978
r_nbtor_refined	0.312
r_nbd_refined	0.215
r_symmetry_nbd_refined	0.168
r_symmetry_xyhbond_nbd_refined	0.133
r_chiral_restr	0.123
r_xyhbond_nbd_refined	0.109
r_gen_planes_refined	0.013
r_bond_refined_d	0.012

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1718
Nucleic Acid Atoms
Solvent Atoms	129
Heterogen Atoms	42

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9SN7 | pdb_00009sn7