Experiment: 9SJF

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	Other		Previously solved structure of BT3087 E360A apo used for MR

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	Co-crystallisation where the protein was pre-incubated with 5mM dextran 1.5 before being dispensed into trays Condition: 0.5M Lithium chloride 1.6M Ammonium sulphate

Crystal Properties
Matthews coefficient	Solvent content
2.68	54.14

Symmetry
Space Group	P 41 21 2

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 XE 16M		2021-10-15	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	0.89842	Diamond	I03

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.2	47.03	100	0.319	0.332	0.09	0.996	7.7	24.8		73184

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	2.2	2.25	100		2.225	2.397	0.871	0.505	1.1	13.7

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2.2	46.294	73027	3603	99.947	0.205	0.2017	0.2016	0.2617	0.2617	38.107

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.137			1.137		-2.274

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	14.176
r_dihedral_angle_6_deg	13.696
r_lrange_it	11.009
r_scangle_it	8.074
r_dihedral_angle_1_deg	7.27
r_dihedral_angle_2_deg	7.093
r_scbond_it	6.004
r_mcangle_it	4.925
r_mcbond_it	3.658
r_angle_refined_deg	1.885

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	14.176
r_dihedral_angle_6_deg	13.696
r_lrange_it	11.009
r_scangle_it	8.074
r_dihedral_angle_1_deg	7.27
r_dihedral_angle_2_deg	7.093
r_scbond_it	6.004
r_mcangle_it	4.925
r_mcbond_it	3.658
r_angle_refined_deg	1.885
r_nbtor_refined	0.312
r_symmetry_nbd_refined	0.255
r_nbd_refined	0.213
r_symmetry_xyhbond_nbd_refined	0.176
r_xyhbond_nbd_refined	0.146
r_chiral_restr	0.124
r_ncsr_local_group_1	0.067
r_bond_refined_d	0.008
r_gen_planes_refined	0.008

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	9000
Nucleic Acid Atoms
Solvent Atoms	466
Heterogen Atoms	234

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9SJF | pdb_00009sjf