9SIL | pdb_00009sil

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	9SIK

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	7	294	20 mM Tris H-Cl, 100 mM KCl, 0.1 M HEPES pH 7.0, 12% (w/v) PEG 8000

Crystal Properties
Matthews coefficient	Solvent content
1.85	33.62

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 6M		2018-02-09	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALBA BEAMLINE XALOC	0.97980	ALBA	XALOC

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.085	144.42	95.6	0.994	10	10.4		17754			25.21

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.085	2.2	78.8		0.599	1.9	5.3

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2.085	72.209	17697	878	95.525	0.188	0.1863	0.1916	0.2298	0.2321	24.373

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.401			-1.734		2.136

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	15.282
r_dihedral_angle_6_deg	14.467
r_dihedral_angle_3_deg	10.827
r_dihedral_angle_1_deg	5.868
r_lrange_it	3.406
r_lrange_other	3.294
r_scangle_it	1.883
r_scangle_other	1.883
r_mcangle_other	1.464
r_mcangle_it	1.462

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	15.282
r_dihedral_angle_6_deg	14.467
r_dihedral_angle_3_deg	10.827
r_dihedral_angle_1_deg	5.868
r_lrange_it	3.406
r_lrange_other	3.294
r_scangle_it	1.883
r_scangle_other	1.883
r_mcangle_other	1.464
r_mcangle_it	1.462
r_scbond_it	1.167
r_scbond_other	1.167
r_angle_refined_deg	1.042
r_mcbond_it	0.92
r_mcbond_other	0.916
r_angle_other_deg	0.381
r_chiral_restr	0.217
r_nbd_refined	0.194
r_symmetry_nbd_other	0.179
r_nbtor_refined	0.172
r_nbd_other	0.169
r_symmetry_xyhbond_nbd_refined	0.157
r_xyhbond_nbd_refined	0.151
r_symmetry_nbd_refined	0.079
r_symmetry_nbtor_other	0.076
r_bond_refined_d	0.003
r_gen_planes_refined	0.003
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2214
Nucleic Acid Atoms
Solvent Atoms	184
Heterogen Atoms	68

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.