9SIJ | pdb_00009sij

Phage epsilon15 tailspike gp20 esterase domain modified with selenomethionine

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		294	20mM Tris H-Cl, 0.1 M Citrate pH 5.5, 12% PEG (w/v) 4000

Crystal Properties
Matthews coefficient	Solvent content
1.87	34.12

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 41.725	α = 90
b = 49.686	β = 90
c = 144.692	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2015-12-17	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALBA BEAMLINE XALOC	0.97852	ALBA	XALOC

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.64	144.69	100	0.999	18.3	12.8		37674			21.319

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.64	1.73	100		0.781	2.4	13.1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	SAD	FREE R-VALUE	1.643	72.346	37601	1882	99.968	0.147	0.145	0.1515	0.1752	0.1794	21.371

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.074			-0.141		0.067

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.199
r_dihedral_angle_3_deg	9.798
r_dihedral_angle_1_deg	6.089
r_dihedral_angle_2_deg	5.605
r_lrange_it	5.221
r_lrange_other	5.143
r_scangle_it	3.689
r_scangle_other	3.688
r_scbond_it	2.392
r_scbond_other	2.391
r_mcangle_it	2.057
r_mcangle_other	2.056
r_mcbond_it	1.35
r_angle_refined_deg	1.349
r_mcbond_other	1.336
r_angle_other_deg	0.467
r_symmetry_nbd_refined	0.309
r_nbd_refined	0.215
r_nbd_other	0.179
r_symmetry_xyhbond_nbd_refined	0.179
r_nbtor_refined	0.177
r_symmetry_nbd_other	0.176
r_xyhbond_nbd_refined	0.147
r_symmetry_nbtor_other	0.078
r_chiral_restr	0.066
r_bond_refined_d	0.006
r_gen_planes_refined	0.006
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2219
Nucleic Acid Atoms
Solvent Atoms	247
Heterogen Atoms	92

Software

Software
Software Name	Purpose
REFMAC	refinement
HKL-3000	data reduction
Aimless	data scaling
CRANK	phasing