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Drosophila Elav, eSH3 fragment (RRM3) - hexagonal crystal form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other trigonal structure of eSH3 fragment
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 291 0.9 M lithium sulphate, 0.5 M ammonium sulphate, 100 mM sodium citrate
Crystal Properties Matthews coefficient Solvent content 4.09 69.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.1 α = 90 b = 92.1 β = 90 c = 307.72 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-10-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.73 102.6 99.8 0.116 0.116 16.6 13.9 8796 101
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.73 3.83 99.2 0.798 0.798 3.6 14.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3.73 79.761 8727 413 99.828 0.235 0.234 0.2346 0.2555 0.2521 Random selection 137.664
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.391 2.196 4.391 -14.246
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 19.289 r_lrange_other 19.288 r_dihedral_angle_3_deg 17.235 r_dihedral_angle_2_deg 16.306 r_scangle_it 15.498 r_scangle_other 15.493 r_mcangle_it 13.964 r_mcangle_other 13.962 r_dihedral_angle_6_deg 11.143 r_scbond_it 10.492
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 19.289 r_lrange_other 19.288 r_dihedral_angle_3_deg 17.235 r_dihedral_angle_2_deg 16.306 r_scangle_it 15.498 r_scangle_other 15.493 r_mcangle_it 13.964 r_mcangle_other 13.962 r_dihedral_angle_6_deg 11.143 r_scbond_it 10.492 r_scbond_other 10.487 r_mcbond_it 8.95 r_mcbond_other 8.946 r_dihedral_angle_1_deg 7.01 r_angle_refined_deg 1.417 r_angle_other_deg 0.483 r_symmetry_xyhbond_nbd_refined 0.434 r_symmetry_nbd_refined 0.3 r_nbd_refined 0.277 r_symmetry_nbd_other 0.206 r_nbtor_refined 0.197 r_nbd_other 0.151 r_ncsr_local_group_2 0.127 r_xyhbond_nbd_refined 0.124 r_ncsr_local_group_4 0.099 r_ncsr_local_group_3 0.097 r_ncsr_local_group_5 0.093 r_symmetry_nbtor_other 0.092 r_ncsr_local_group_6 0.092 r_ncsr_local_group_1 0.086 r_chiral_restr 0.062 r_xyhbond_nbd_other 0.03 r_gen_planes_refined 0.005 r_bond_refined_d 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2093 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing