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Ternary structure of 14-3-3s, CRAF V263A NS mutant phosphopeptide (pS259), and compound 22 (1083853)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IQU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES pH=7.1-7.7 0.19 M CaCl2 5% glycerol 24-29% PEG400
Crystal Properties Matthews coefficient Solvent content 2.58 52.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.528 α = 90 b = 111.434 β = 90 c = 62.625 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 4M 2023-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-3 0.967697 ESRF MASSIF-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 65.8 99.2 0.997 11.3 7.8 45619
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 0.757
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 65.8 43321 2278 99.16 0.1801 0.17919 0.1787 0.19714 0.1986 RANDOM 18.832
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.11 -0.45 -0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.584 r_long_range_B_refined 8.737 r_long_range_B_other 8.636 r_scangle_other 8.376 r_scbond_it 6.405 r_scbond_other 6.401 r_dihedral_angle_2_deg 5.926 r_mcangle_other 5.262 r_mcangle_it 5.261 r_dihedral_angle_1_deg 4.664
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.584 r_long_range_B_refined 8.737 r_long_range_B_other 8.636 r_scangle_other 8.376 r_scbond_it 6.405 r_scbond_other 6.401 r_dihedral_angle_2_deg 5.926 r_mcangle_other 5.262 r_mcangle_it 5.261 r_dihedral_angle_1_deg 4.664 r_mcbond_it 4.052 r_mcbond_other 4.049 r_angle_refined_deg 0.848 r_angle_other_deg 0.38 r_chiral_restr 0.04 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1928 Nucleic Acid Atoms Solvent Atoms 270 Heterogen Atoms 24
Software Software Software Name Purpose PDB-REDO refinement autoPROC data reduction Aimless data scaling MOLREP phasing