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Crystal structure of Aurora-A bound to DBL6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.8% Alkaloids, 0.12M Ethyleneglycol, 0.1M Buffer system 3 pH 8.5, 30% Precipitant mix 1
Crystal Properties Matthews coefficient Solvent content 2.29 46.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.735 α = 90 b = 75.483 β = 90 c = 87.736 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2024-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9537 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.355 57.22 78.5 1 28.2 8.3 12251
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.36 2.52 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.355 57.22 12251 635 78.457 0.2 0.1965 0.2051 0.2585 0.2599 37.692
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.157 -0.361 0.204
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 11.729 r_dihedral_angle_6_deg 10.895 r_dihedral_angle_1_deg 5.979 r_dihedral_angle_2_deg 5.964 r_lrange_it 5.825 r_lrange_other 5.812 r_scangle_it 3.709 r_scangle_other 3.709 r_mcangle_other 3.165 r_mcangle_it 3.164
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 11.729 r_dihedral_angle_6_deg 10.895 r_dihedral_angle_1_deg 5.979 r_dihedral_angle_2_deg 5.964 r_lrange_it 5.825 r_lrange_other 5.812 r_scangle_it 3.709 r_scangle_other 3.709 r_mcangle_other 3.165 r_mcangle_it 3.164 r_scbond_it 2.154 r_scbond_other 2.153 r_mcbond_it 1.829 r_mcbond_other 1.828 r_angle_refined_deg 0.947 r_angle_other_deg 0.334 r_symmetry_nbd_refined 0.219 r_dihedral_angle_other_2_deg 0.204 r_nbd_refined 0.198 r_symmetry_nbd_other 0.179 r_nbtor_refined 0.176 r_symmetry_xyhbond_nbd_refined 0.157 r_nbd_other 0.14 r_xyhbond_nbd_refined 0.13 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.045 r_gen_planes_refined 0.003 r_bond_refined_d 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2527 Nucleic Acid Atoms Solvent Atoms 85 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction STARANISO data scaling MOLREP phasing REFMAC refinement PDB-REDO refinement