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Crystal structure of Cryptosporidium parvum Thioredoxin Reductase in complex with the dicarbene Au(I) complex Au(NHC)2PF6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9G92
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 294.15 0.1 M Tris/HCl, 0.1 M KSCN, PEG 2000 MME
Crystal Properties Matthews coefficient Solvent content 2.3 46.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.97 α = 90 b = 74.291 β = 90 c = 191.091 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2025-05-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1.0 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 29.4 100 0.125 0.13 0.036 0.998 16.3 12.6 53645
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.27 100 0.909 0.949 0.27 0.955 12.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 29.39 50928 2643 99.93 0.2097 0.20753 0.2127 0.25177 0.2556 RANDOM 37.774
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.96 2.56 -0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.133 r_dihedral_angle_4_deg 18.516 r_dihedral_angle_3_deg 14.869 r_dihedral_angle_1_deg 7.591 r_long_range_B_refined 7.054 r_long_range_B_other 7.053 r_scangle_other 5.695 r_mcangle_it 4.794 r_mcangle_other 4.793 r_scbond_it 3.977
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.133 r_dihedral_angle_4_deg 18.516 r_dihedral_angle_3_deg 14.869 r_dihedral_angle_1_deg 7.591 r_long_range_B_refined 7.054 r_long_range_B_other 7.053 r_scangle_other 5.695 r_mcangle_it 4.794 r_mcangle_other 4.793 r_scbond_it 3.977 r_scbond_other 3.977 r_mcbond_it 3.461 r_mcbond_other 3.461 r_angle_refined_deg 1.556 r_angle_other_deg 1.284 r_chiral_restr 0.078 r_bond_refined_d 0.01 r_bond_other_d 0.008 r_gen_planes_refined 0.007 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7431 Nucleic Acid Atoms Solvent Atoms 201 Heterogen Atoms 107
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction PHASER phasing