9RSG | pdb_00009rsg

Human TRPC5 in complex with (-) englerin A, mixed occupancy_2, state 2


ELECTRON MICROSCOPY

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
in silico modelOther 

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d4.371
f_angle_d0.519
f_chiral_restr0.038
f_plane_restr0.004
f_bond_d0.003
Sample
Human TRPC5 in complex with (-) englerin A, mixed occupancy_2, state 2
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles62384
Reported Resolution (Å)3.2
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1
Refinement SpaceREAL
Refinement ProtocolAB INITIO MODEL
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeFEI FALCON IV (4k x 4k)
Electron Dose (electrons/Å**2)34.75
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)700
Maximum Defocus (nm)3000
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder ModelFEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONcryoSPARCv4.4
MODEL REFINEMENTPHENIX1.21.2_5419
CTF CORRECTIONcryoSPARCv4.4
INITIAL EULER ASSIGNMENTcryoSPARCv4.4
FINAL EULER ASSIGNMENTcryoSPARCv4.4
CLASSIFICATIONcryoSPARCv4.4
RECONSTRUCTIONcryoSPARCv4.4
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION