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Leishmania major N-myristoyltransferase in complex with azetidinopyrimidine inhibitor IMP-825
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291 30% PEG 1500, 0.2 M NaCl, 0.1 M Na cacodylate
Crystal Properties Matthews coefficient Solvent content 2.23 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.366 α = 90 b = 91.721 β = 112.923 c = 53.552 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2012-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.920 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.49 49.4 98.9 0.036 15.3 4.3 69322
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.49 1.52 99.6 0.848 1.4 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.49 49.323 69293 3437 98.783 0.188 0.1855 0.1855 0.2269 0.2268 26.533
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.007 -0.658 0.24 0.228
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.478 r_dihedral_angle_3_deg 15.27 r_lrange_it 7.199 r_dihedral_angle_1_deg 6.656 r_scangle_it 5.135 r_dihedral_angle_2_deg 4.981 r_mcangle_it 3.679 r_scbond_it 3.495 r_mcbond_it 2.574 r_angle_refined_deg 2.257
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.478 r_dihedral_angle_3_deg 15.27 r_lrange_it 7.199 r_dihedral_angle_1_deg 6.656 r_scangle_it 5.135 r_dihedral_angle_2_deg 4.981 r_mcangle_it 3.679 r_scbond_it 3.495 r_mcbond_it 2.574 r_angle_refined_deg 2.257 r_nbtor_refined 0.316 r_symmetry_nbd_refined 0.277 r_nbd_refined 0.216 r_xyhbond_nbd_refined 0.151 r_chiral_restr 0.146 r_symmetry_xyhbond_nbd_refined 0.129 r_bond_refined_d 0.011 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3354 Nucleic Acid Atoms Solvent Atoms 389 Heterogen Atoms 93
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling REFMAC phasing