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Leishmania major N-myristoyltransferase in complex with azetidinopyrimidine inhibitor IMP-821
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291 30% PEG 1500, 0.2 M NaCl, 0.1 M Na cacodylate
Crystal Properties Matthews coefficient Solvent content 2.23 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.356 α = 90 b = 91.848 β = 112.811 c = 53.477 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2012-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9200 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.49 49.3 98.8 0.044 12.6 4.2 69287
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.49 1.52 99 0.998 1.2 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.49 49.294 69253 3430 98.673 0.191 0.1887 0.1887 0.2284 0.2284 26.007
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.164 -0.501 0.54 0.033
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.303 r_dihedral_angle_3_deg 14.061 r_lrange_it 7.011 r_dihedral_angle_2_deg 6.598 r_dihedral_angle_1_deg 6.514 r_scangle_it 4.942 r_mcangle_it 3.823 r_scbond_it 3.321 r_mcbond_it 2.578 r_angle_refined_deg 2.014
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.303 r_dihedral_angle_3_deg 14.061 r_lrange_it 7.011 r_dihedral_angle_2_deg 6.598 r_dihedral_angle_1_deg 6.514 r_scangle_it 4.942 r_mcangle_it 3.823 r_scbond_it 3.321 r_mcbond_it 2.578 r_angle_refined_deg 2.014 r_nbtor_refined 0.316 r_symmetry_nbd_refined 0.238 r_nbd_refined 0.214 r_xyhbond_nbd_refined 0.159 r_chiral_restr 0.134 r_symmetry_xyhbond_nbd_refined 0.132 r_bond_refined_d 0.01 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3354 Nucleic Acid Atoms Solvent Atoms 454 Heterogen Atoms 94
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling REFMAC phasing