9R4W | pdb_00009r4w

Solution NMR structure of SNX9 SH3 in complex with EspF


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1.3 mM [U-13C; U-15N] SNX9 SH3, 1.5 mM EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
22D 1H-13C HSQC aliphatic1.3 mM [U-13C; U-15N] SNX9 SH3, 1.5 mM EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
32D 1H-13C HSQC aromatic1.3 mM [U-13C; U-15N] SNX9 SH3, 1.5 mM EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
43D HNCACB1.3 mM [U-13C; U-15N] SNX9 SH3, 1.5 mM EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
53D HN(COCA)CB1.3 mM [U-13C; U-15N] SNX9 SH3, 1.5 mM EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
63D HNCO1.3 mM [U-13C; U-15N] SNX9 SH3, 1.5 mM EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
73D iHNCO1.3 mM [U-13C; U-15N] SNX9 SH3, 1.5 mM EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
83D H(CCO)NH1.3 mM [U-13C; U-15N] SNX9 SH3, 1.5 mM EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
93D C(CO)NH1.3 mM [U-13C; U-15N] SNX9 SH3, 1.5 mM EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
103D HBHA(CO)NH1.3 mM [U-13C; U-15N] SNX9 SH3, 1.5 mM EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
113D HCCH-COSY1.3 mM [U-13C; U-15N] SNX9 SH3, 1.5 mM EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
123D HCCmHm-TOCSY1.3 mM [U-13C; U-15N] SNX9 SH3, 1.5 mM EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
132D (HB)CB(CGCD)HD1.3 mM [U-13C; U-15N] SNX9 SH3, 1.5 mM EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
142D (HB)CB(CGCDCE)HE1.3 mM [U-13C; U-15N] SNX9 SH3, 1.5 mM EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
153D 1H-15N NOESY1.3 mM [U-13C; U-15N] SNX9 SH3, 1.5 mM EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
163D 1H-13C NOESY aliphatic1.3 mM [U-13C; U-15N] SNX9 SH3, 1.5 mM EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
173D 1H-13C NOESY aromatic1.3 mM [U-13C; U-15N] SNX9 SH3, 1.5 mM EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
182D 1H-15N HSQC1.9 mM SNX9 SH3, 1.5 mM [U-13C; U-15N] EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
192D 1H-13C HSQC aliphatic1.9 mM SNX9 SH3, 1.5 mM [U-13C; U-15N] EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
202D 1H-13C HSQC aromatic1.9 mM SNX9 SH3, 1.5 mM [U-13C; U-15N] EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
213D HNCACB1.9 mM SNX9 SH3, 1.5 mM [U-13C; U-15N] EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
223D HN(COCA)CB1.9 mM SNX9 SH3, 1.5 mM [U-13C; U-15N] EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
233D HNCO1.9 mM SNX9 SH3, 1.5 mM [U-13C; U-15N] EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
243D iHNCO1.9 mM SNX9 SH3, 1.5 mM [U-13C; U-15N] EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
253D H(CCO)NH1.9 mM SNX9 SH3, 1.5 mM [U-13C; U-15N] EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
263D C(CO)NH1.9 mM SNX9 SH3, 1.5 mM [U-13C; U-15N] EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
273D HBHA(CO)NH1.9 mM SNX9 SH3, 1.5 mM [U-13C; U-15N] EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
283D HCCH-COSY1.9 mM SNX9 SH3, 1.5 mM [U-13C; U-15N] EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
293D HCCmHm-TOCSY1.9 mM SNX9 SH3, 1.5 mM [U-13C; U-15N] EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
302D (HB)CB(CGCD)HD1.9 mM SNX9 SH3, 1.5 mM [U-13C; U-15N] EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
312D (HB)CB(CGCDCE)HE1.9 mM SNX9 SH3, 1.5 mM [U-13C; U-15N] EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
323D 1H-15N NOESY1.9 mM SNX9 SH3, 1.5 mM [U-13C; U-15N] EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
333D 1H-13C NOESY aliphatic1.9 mM SNX9 SH3, 1.5 mM [U-13C; U-15N] EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
343D 1H-13C NOESY aromatic1.9 mM SNX9 SH3, 1.5 mM [U-13C; U-15N] EspF, 20 mM sodium phosphate, 50 mM sodium chloride93% H2O/7% D2O150 mM6.5ambient atm298Bruker AVANCE III HD 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III HD800
NMR Refinement
MethodDetailsSoftware
restrained molecular dynamicsAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number30
Conformers Submitted Total Number20
Representative Model1 (fewest violations)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpinBruker Biospin
2processingTopSpinBruker Biospin
3data analysisCcpNmr AnalysisCCPN
4structure calculationCYANAGuntert, Mumenthaler and Wuthrich
5refinementAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman