☰ Navigation Tabs
HaloTag bound to compound MRC71
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5UY1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 291 25% PEG 4000, 0.1 M Na MES pH 6.5, 0.2 M Mg Chloride.
Crystal Properties Matthews coefficient Solvent content 2.31 46.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.797 α = 90 b = 62.797 β = 90 c = 163.274 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 16M 2021-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.04 58.68 99.7 1 4.8 10.1 21548
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.04 2.08 0.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.043 58.68 21479 1048 99.634 0.24 0.2373 0.233 0.2861 0.2831 38.043
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.44 2.44 -4.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.724 r_dihedral_angle_6_deg 13.601 r_dihedral_angle_2_deg 8.83 r_dihedral_angle_1_deg 7.245 r_lrange_other 7.003 r_lrange_it 6.999 r_scangle_it 4.673 r_scangle_other 4.671 r_mcangle_other 4.366 r_mcangle_it 4.363
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.724 r_dihedral_angle_6_deg 13.601 r_dihedral_angle_2_deg 8.83 r_dihedral_angle_1_deg 7.245 r_lrange_other 7.003 r_lrange_it 6.999 r_scangle_it 4.673 r_scangle_other 4.671 r_mcangle_other 4.366 r_mcangle_it 4.363 r_scbond_it 2.991 r_scbond_other 2.99 r_mcbond_other 2.957 r_mcbond_it 2.956 r_angle_refined_deg 1.613 r_angle_other_deg 0.547 r_symmetry_nbd_refined 0.29 r_nbd_refined 0.216 r_nbd_other 0.211 r_symmetry_nbd_other 0.196 r_nbtor_refined 0.19 r_xyhbond_nbd_refined 0.17 r_symmetry_xyhbond_nbd_refined 0.133 r_symmetry_nbtor_other 0.083 r_chiral_restr 0.073 r_symmetry_xyhbond_nbd_other 0.018 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2351 Nucleic Acid Atoms Solvent Atoms 43 Heterogen Atoms 57
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing