☰ Navigation Tabs
Crystal structure of human MAO B in complex with (E)-3-(benzo[d][1,3]dioxol-5-yl)-1-(3-(trifluoromethyl)phenyl)prop-2-en-1-one (chalcone inhibitor, 4e)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7B0V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 12% PEG4000, 100 mM ADA pH 6.5, 70 mM lithium sulphate, 8.5 mM Zwittergent 3-12
Crystal Properties Matthews coefficient Solvent content 2.73 54.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 131.299 α = 90 b = 222.293 β = 90 c = 86.211 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2023-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.97 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 47.27 100 0.071 0.085 0.045 0.999 16.4 6.5 138049
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 0.601 0.714 0.38 0.83
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.7 47.27 138038 3453 99.901 0.15 0.1498 0.1621 0.1725 0.1815 18.79
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.865 -0.718 -0.147
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.257 r_dihedral_angle_other_3_deg 19.43 r_dihedral_angle_4_deg 14.958 r_dihedral_angle_3_deg 13.21 r_dihedral_angle_1_deg 6.533 r_lrange_it 5.82 r_lrange_other 5.672 r_scangle_it 4.727 r_scangle_other 4.727 r_scbond_it 3.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.257 r_dihedral_angle_other_3_deg 19.43 r_dihedral_angle_4_deg 14.958 r_dihedral_angle_3_deg 13.21 r_dihedral_angle_1_deg 6.533 r_lrange_it 5.82 r_lrange_other 5.672 r_scangle_it 4.727 r_scangle_other 4.727 r_scbond_it 3.18 r_scbond_other 3.18 r_mcangle_other 2.258 r_mcangle_it 2.256 r_angle_other_deg 1.881 r_angle_refined_deg 1.836 r_mcbond_it 1.645 r_mcbond_other 1.638 r_nbd_refined 0.214 r_nbd_other 0.205 r_symmetry_nbd_other 0.194 r_symmetry_xyhbond_nbd_other 0.187 r_nbtor_refined 0.177 r_chiral_restr 0.164 r_symmetry_nbd_refined 0.152 r_xyhbond_nbd_refined 0.133 r_symmetry_xyhbond_nbd_refined 0.129 r_symmetry_nbtor_other 0.085 r_chiral_restr_other 0.049 r_bond_refined_d 0.014 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7926 Nucleic Acid Atoms Solvent Atoms 879 Heterogen Atoms 178
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing