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Myc pS294 phosphopeptide binding to 14-3-3sigma
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3IQU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.095 M HEPES pH=7.1-7.7
0.19 M CaCl2
5% glycerol
24-29% PEG400
Crystal Properties Matthews coefficient Solvent content 2.67 53.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.851 α = 90 b = 112.721 β = 90 c = 62.964 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 9M 2024-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.873128 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 66.76 88.3 1 31.2 13.5 63609
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.33 0.948 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.3 45.85 60348 3237 88.21 0.14022 0.13872 0.1799 0.1674 0.1959 RANDOM 18.939
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.38 -0.91 -1.47
RMS Deviations Key Refinement Restraint Deviation r_scbond_it 93.024 r_scbond_other 93.013 r_mcangle_it 75.435 r_mcangle_other 75.408 r_mcbond_it 55.726 r_mcbond_other 55.721 r_dihedral_angle_3_deg 12.592 r_rigid_bond_restr 9.042 r_dihedral_angle_1_deg 5.987 r_angle_refined_deg 0.911
RMS Deviations Key Refinement Restraint Deviation r_scbond_it 93.024 r_scbond_other 93.013 r_mcangle_it 75.435 r_mcangle_other 75.408 r_mcbond_it 55.726 r_mcbond_other 55.721 r_dihedral_angle_3_deg 12.592 r_rigid_bond_restr 9.042 r_dihedral_angle_1_deg 5.987 r_angle_refined_deg 0.911 r_angle_other_deg 0.41 r_chiral_restr 0.043 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1925 Nucleic Acid Atoms Solvent Atoms 280 Heterogen Atoms 8
Software Software Software Name Purpose PDB-REDO refinement autoPROC data reduction Aimless data scaling MOLREP phasing