☰ Navigation Tabs
Crystal structure of I105R mutant of BlaC from Mycobacterium tuberculosis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GDN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.08 291 22%v/v PEGSM, 0.2M Na Acetate, 0.024M Zn Chloride
Crystal Properties Matthews coefficient Solvent content 1.89 34.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.161 α = 90 b = 40.975 β = 90 c = 267.495 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 S 9M 2023-06-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.8731 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 44.62 98.6 0.995 8.2 1.8 40588
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 0.589 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 44.62 38570 2018 98.31 0.1754 0.1735 0.1854 0.21118 0.2216 RANDOM 26.433
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.76 0.2 -0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 11.638 r_dihedral_angle_2_deg 7.586 r_dihedral_angle_1_deg 6.677 r_long_range_B_refined 4.846 r_long_range_B_other 4.779 r_scangle_other 2.836 r_scbond_it 1.82 r_scbond_other 1.82 r_mcangle_it 1.675 r_mcangle_other 1.674
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 11.638 r_dihedral_angle_2_deg 7.586 r_dihedral_angle_1_deg 6.677 r_long_range_B_refined 4.846 r_long_range_B_other 4.779 r_scangle_other 2.836 r_scbond_it 1.82 r_scbond_other 1.82 r_mcangle_it 1.675 r_mcangle_other 1.674 r_angle_refined_deg 1.524 r_mcbond_it 1.117 r_mcbond_other 1.117 r_angle_other_deg 0.54 r_chiral_restr 0.077 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3987 Nucleic Acid Atoms Solvent Atoms 261 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement MOLREP phasing XDS data reduction Aimless data scaling