☰ Navigation Tabs
The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 29c
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 16% PEG3350, 0.1 HEPES-NaOH pH 7.5, 0.2 M ammonium acetate 10% Glycol
Crystal Properties Matthews coefficient Solvent content 2.41 48.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.938 α = 90 b = 48.938 β = 90 c = 195.364 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2023-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.74 48.84 99.9 0.046 0.051 0.021 1 18.4 10.4 29128
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.74 1.77 97.9 1.467 1.625 0.688 0.603 1.4 10.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.74 42.418 29056 1494 99.842 0.234 0.2322 0.2325 0.2632 0.2641 48.659
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.556 -0.278 -0.556 1.804
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.519 r_dihedral_angle_3_deg 14.566 r_dihedral_angle_6_deg 14.29 r_dihedral_angle_1_deg 8.053 r_lrange_other 6.607 r_lrange_it 6.605 r_scangle_it 4.693 r_scangle_other 4.691 r_mcangle_other 3.929 r_mcangle_it 3.927
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.519 r_dihedral_angle_3_deg 14.566 r_dihedral_angle_6_deg 14.29 r_dihedral_angle_1_deg 8.053 r_lrange_other 6.607 r_lrange_it 6.605 r_scangle_it 4.693 r_scangle_other 4.691 r_mcangle_other 3.929 r_mcangle_it 3.927 r_scbond_it 3.536 r_scbond_other 3.534 r_mcbond_it 3.072 r_mcbond_other 3.064 r_angle_refined_deg 1.926 r_angle_other_deg 0.629 r_symmetry_nbd_refined 0.288 r_symmetry_xyhbond_nbd_refined 0.266 r_nbd_refined 0.203 r_symmetry_nbd_other 0.196 r_nbtor_refined 0.182 r_nbd_other 0.123 r_xyhbond_nbd_refined 0.118 r_ncsr_local_group_1 0.1 r_chiral_restr 0.095 r_symmetry_nbtor_other 0.092 r_bond_refined_d 0.01 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1875 Nucleic Acid Atoms Solvent Atoms 66 Heterogen Atoms 72
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing