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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 29a
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 16% PEG3350, 0.1 HEPES-NaOH pH 7.5, 0.2 M ammonium acetate 10% Glycol
Crystal Properties Matthews coefficient Solvent content 2.42 49.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.919 α = 90 b = 48.919 β = 90 c = 196.163 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2023-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 49.04 100 0.094 0.104 0.043 0.999 13.7 10.5 18036
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.05 2.11 100 1.339 1.473 0.61 0.718 2 10.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.05 38.922 17972 874 99.917 0.213 0.2107 0.2104 0.2651 0.2673 47.018
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.755 -0.378 -0.755 2.451
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.607 r_dihedral_angle_3_deg 15.243 r_dihedral_angle_6_deg 14.984 r_dihedral_angle_1_deg 8.791 r_lrange_other 6.801 r_lrange_it 6.797 r_scangle_it 5.114 r_scangle_other 5.112 r_mcangle_it 4.356 r_mcangle_other 4.355
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.607 r_dihedral_angle_3_deg 15.243 r_dihedral_angle_6_deg 14.984 r_dihedral_angle_1_deg 8.791 r_lrange_other 6.801 r_lrange_it 6.797 r_scangle_it 5.114 r_scangle_other 5.112 r_mcangle_it 4.356 r_mcangle_other 4.355 r_scbond_it 3.662 r_scbond_other 3.66 r_mcbond_it 3.368 r_mcbond_other 3.358 r_angle_refined_deg 2.198 r_angle_other_deg 0.717 r_symmetry_nbd_refined 0.469 r_nbd_refined 0.216 r_symmetry_nbd_other 0.199 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.157 r_nbd_other 0.15 r_ncsr_local_group_1 0.118 r_chiral_restr 0.1 r_symmetry_nbtor_other 0.095 r_symmetry_xyhbond_nbd_refined 0.076 r_symmetry_xyhbond_nbd_other 0.015 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1890 Nucleic Acid Atoms Solvent Atoms 61 Heterogen Atoms 70
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing