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Drosophila melanogaster angiotensin converting enzyme homologue, AnCE in complex with YW dipeptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5A2R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 289 1.2 M sodium citrate, 0.1 M HEPES pH 7.5
Crystal Properties Matthews coefficient Solvent content 4.24 71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 172.432 α = 90 b = 172.432 β = 90 c = 103.5 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2024-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.95 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 86.22 100 0.077 0.994 7 10.2 58227
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 0.692 0.599 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.2 86.216 58223 2789 99.995 0.165 0.1628 0.172 0.2058 0.212 36.774
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.063 -0.532 -1.063 3.449
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.056 r_dihedral_angle_6_deg 15.362 r_dihedral_angle_2_deg 10.79 r_lrange_other 9.63 r_lrange_it 9.61 r_scangle_it 8.973 r_scangle_other 8.972 r_dihedral_angle_1_deg 6.64 r_scbond_it 6.57 r_scbond_other 6.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.056 r_dihedral_angle_6_deg 15.362 r_dihedral_angle_2_deg 10.79 r_lrange_other 9.63 r_lrange_it 9.61 r_scangle_it 8.973 r_scangle_other 8.972 r_dihedral_angle_1_deg 6.64 r_scbond_it 6.57 r_scbond_other 6.57 r_mcangle_it 5.052 r_mcangle_other 5.052 r_mcbond_it 3.887 r_mcbond_other 3.887 r_angle_refined_deg 2.56 r_angle_other_deg 0.86 r_nbd_other 0.248 r_chiral_restr 0.235 r_nbd_refined 0.234 r_nbtor_refined 0.205 r_symmetry_nbd_other 0.204 r_symmetry_nbd_refined 0.192 r_symmetry_xyhbond_nbd_refined 0.171 r_xyhbond_nbd_refined 0.159 r_symmetry_nbtor_other 0.096 r_symmetry_xyhbond_nbd_other 0.064 r_bond_refined_d 0.014 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4928 Nucleic Acid Atoms Solvent Atoms 306 Heterogen Atoms 101
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling PHASER phasing