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MEKK1 SWIM and RING Domains
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.2 291.15 0.04 M NaH2PO4 and 0.96 M K2HPO4
Crystal Properties Matthews coefficient Solvent content 2.73 55.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.832 α = 90 b = 119.832 β = 90 c = 56.581 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.95 41.171 99 0.203 0.222 0.091 0.99 7.5 5.8 8923 52.52
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.05 3.26 99.3 1.048 1.151 0.469 0.71 1.7 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3.05 41.171 8920 450 98.935 0.181 0.1788 0.1795 0.2203 0.2209 70.69
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.067 0.033 0.067 -0.216
RMS Deviations Key Refinement Restraint Deviation r_lrange_other 34.394 r_lrange_it 34.393 r_scangle_it 20.62 r_scangle_other 20.615 r_mcangle_other 18.368 r_mcangle_it 18.354 r_dihedral_angle_3_deg 17.117 r_dihedral_angle_6_deg 15.496 r_dihedral_angle_2_deg 14.062 r_scbond_other 13.552
RMS Deviations Key Refinement Restraint Deviation r_lrange_other 34.394 r_lrange_it 34.393 r_scangle_it 20.62 r_scangle_other 20.615 r_mcangle_other 18.368 r_mcangle_it 18.354 r_dihedral_angle_3_deg 17.117 r_dihedral_angle_6_deg 15.496 r_dihedral_angle_2_deg 14.062 r_scbond_other 13.552 r_scbond_it 13.469 r_mcbond_other 11.748 r_mcbond_it 11.729 r_dihedral_angle_1_deg 6.765 r_rigid_bond_restr 5.468 r_angle_refined_deg 2.173 r_angle_other_deg 0.544 r_nbd_other 0.254 r_nbd_refined 0.225 r_symmetry_nbd_other 0.215 r_symmetry_nbd_refined 0.195 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.175 r_symmetry_nbtor_other 0.084 r_chiral_restr 0.074 r_symmetry_xyhbond_nbd_refined 0.046 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2735 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing