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C5 reconstruction of the thermophilic bacteriophage P74-26 Portal Vertex
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.9677 f_angle_d 0.5626 f_chiral_restr 0.0447 f_plane_restr 0.0053 f_bond_d 0.0038
Sample Oshimavirus P7426 Sample Components Capsid
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 40773 Reported Resolution (Å) 2.6 Resolution Method FSC 0.143 CUT-OFF Other Details FSC was calculated inside the provided mask, which excludes the Neck (C12 and C3 components) Refinement Type Symmetry Type POINT Point Symmetry C5
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 49.0571
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 1500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version MODEL REFINEMENT PHENIX dev_5430
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION