☰ Navigation Tabs
Human Neu2 Sialidase Engineered for Better Half-Life
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1VCU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 PEG 6000 8% w/v, NaCl 1.75M
Crystal Properties Matthews coefficient Solvent content 2.65 53.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.639 α = 90 b = 91.639 β = 90 c = 135.373 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9998 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.89 51.5 93.3 0.083 0.09 0.038 12.4 5.7 39430
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.11 10 0.998
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.89 51.5 37510 1919 38.8 0.20597 0.20288 0.2036 0.27057 0.269 RANDOM 35.405
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.79 3.79 -7.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.168 r_dihedral_angle_3_deg 14.79 r_dihedral_angle_4_deg 14.078 r_dihedral_angle_1_deg 7.925 r_long_range_B_refined 1.993 r_long_range_B_other 1.967 r_angle_refined_deg 1.391 r_angle_other_deg 1.068 r_mcangle_other 1.021 r_mcangle_it 1.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.168 r_dihedral_angle_3_deg 14.79 r_dihedral_angle_4_deg 14.078 r_dihedral_angle_1_deg 7.925 r_long_range_B_refined 1.993 r_long_range_B_other 1.967 r_angle_refined_deg 1.391 r_angle_other_deg 1.068 r_mcangle_other 1.021 r_mcangle_it 1.02 r_scangle_other 0.705 r_mcbond_it 0.573 r_mcbond_other 0.573 r_scbond_it 0.388 r_scbond_other 0.388 r_chiral_restr 0.049 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8656 Nucleic Acid Atoms Solvent Atoms 399 Heterogen Atoms 69
Software Software Software Name Purpose autoPROC data reduction XDS data reduction autoPROC data reduction autoPROC data scaling Aimless data scaling REFMAC refinement PHASER phasing