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Crystal structure of FabG4 from Pseudomonas putida KT2440
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Q7B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293.15 0.1 Tris-HCl, 0.12 M ammonium chloride, pH 8.5, 20% PEG-4000
Crystal Properties Matthews coefficient Solvent content 2.16 43.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.724 α = 90 b = 114.181 β = 90 c = 144.528 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD ADSC QUANTUM 315r 2023-05-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.00002 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 49.74 87.2 0.28 0.144 0.994 6.2 8.4 113406
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.602 1.644 24.53 0.53 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.91 49.74 75198 2006 99.65 0.1727 0.17201 0.182 0.19858 0.2052 RANDOM 32.675
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.35 0.58 -0.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.062 r_long_range_B_other 10.847 r_long_range_B_refined 10.808 r_scangle_other 9.547 r_scbond_it 7.046 r_scbond_other 7.045 r_dihedral_angle_1_deg 5.974 r_mcangle_other 4.864 r_mcangle_it 4.863 r_mcbond_it 3.579
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.062 r_long_range_B_other 10.847 r_long_range_B_refined 10.808 r_scangle_other 9.547 r_scbond_it 7.046 r_scbond_other 7.045 r_dihedral_angle_1_deg 5.974 r_mcangle_other 4.864 r_mcangle_it 4.863 r_mcbond_it 3.579 r_mcbond_other 3.577 r_angle_refined_deg 1.217 r_angle_other_deg 0.447 r_chiral_restr 0.061 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7054 Nucleic Acid Atoms Solvent Atoms 588 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PHENIX refinement xia2 data reduction PHENIX phasing Aimless data scaling