Experiment: 9N7P

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2R6S

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		295	10 % v/v Glycerol, 0.05 M MES pH 5.5, 1.5 M Ammonium sulfate

Crystal Properties
Matthews coefficient	Solvent content
2.93	57.96

Symmetry
Space Group	I 4 2 2

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 9M		2023-10-16	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SOLEIL BEAMLINE PROXIMA 2	0.980099	SOLEIL	PROXIMA 2

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.89	48.52	99.8	0.079	0.082	0.022	1	27.4	26.4		35691

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	1.89	1.93	97.4		1.467	1.524	0.41	0.776	2.6	25.9

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.891	48.52	35690	1758	99.807	0.201	0.2	0.2015	0.2283	0.2318	40.192

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.339			-0.339		0.678

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	12.156
r_dihedral_angle_3_deg	11.211
r_lrange_it	10.341
r_scangle_it	9.422
r_scbond_it	7.593
r_mcangle_it	7.318
r_dihedral_angle_1_deg	5.913
r_mcbond_it	5.752
r_dihedral_angle_2_deg	5.713
r_angle_refined_deg	1.149

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	12.156
r_dihedral_angle_3_deg	11.211
r_lrange_it	10.341
r_scangle_it	9.422
r_scbond_it	7.593
r_mcangle_it	7.318
r_dihedral_angle_1_deg	5.913
r_mcbond_it	5.752
r_dihedral_angle_2_deg	5.713
r_angle_refined_deg	1.149
r_nbtor_refined	0.3
r_metal_ion_refined	0.222
r_nbd_refined	0.183
r_symmetry_xyhbond_nbd_refined	0.148
r_symmetry_nbd_refined	0.138
r_xyhbond_nbd_refined	0.099
r_chiral_restr	0.093
r_bond_refined_d	0.004
r_gen_planes_refined	0.004

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2365
Nucleic Acid Atoms
Solvent Atoms	141
Heterogen Atoms	6

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9N7P | pdb_00009n7p