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HEWL crystal soaked in buffer of pH2.0
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 193L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 297 The concentration of the protein was 25 mg/ml. The precipitant solution in the reservoir was 100 mM sodium citrate/HCl buffer of pH 4.3 containing 1.2 M sodium chloride.
Crystal Properties Matthews coefficient Solvent content 2 38.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.034 α = 90 b = 79.034 β = 90 c = 36.734 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD AGILENT ATLAS CCD 2019-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE Agilent SuperNova 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 15.93 97.42 0.08 4 3.5 17815
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.539 0.94
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 15.93 17815 890 97.42 0.18135 0.17915 0.1788 0.22661 0.2274 RANDOM 15.036
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 0.18 -0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.603 r_dihedral_angle_4_deg 22.529 r_dihedral_angle_3_deg 12.579 r_long_range_B_refined 6.917 r_dihedral_angle_1_deg 6.498 r_long_range_B_other 6.056 r_scangle_other 3.869 r_scbond_it 2.488 r_scbond_other 2.478 r_mcangle_other 1.805
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.603 r_dihedral_angle_4_deg 22.529 r_dihedral_angle_3_deg 12.579 r_long_range_B_refined 6.917 r_dihedral_angle_1_deg 6.498 r_long_range_B_other 6.056 r_scangle_other 3.869 r_scbond_it 2.488 r_scbond_other 2.478 r_mcangle_other 1.805 r_mcangle_it 1.787 r_angle_refined_deg 1.72 r_angle_other_deg 1.551 r_mcbond_it 1.167 r_mcbond_other 1.127 r_chiral_restr 0.096 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 228 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement CrysalisPro data reduction Aimless data scaling PHASER phasing