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Zn- Carbonic Anhydrase II pH 11.0 5.0 atm CO2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6LUY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 11 293 1.3 M sodium citrate, 50 mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.06 40.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.052 α = 90 b = 41.188 β = 104.13 c = 71.824 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2020-11-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97934 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 30 96.7 0.076 0.081 0.03 1 27.5 7.5 72393
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 94.2 0.525 0.564 0.205 0.902 4.2 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.2 28.98 68686 3565 96.71 0.1218 0.1205 0.1299 0.14776 0.1548 RANDOM 13.539
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.01 0.01 0.03
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 64.727 r_dihedral_angle_2_deg 35.48 r_dihedral_angle_4_deg 25.492 r_sphericity_bonded 14.124 r_dihedral_angle_3_deg 12.137 r_long_range_B_refined 7.119 r_long_range_B_other 6.749 r_dihedral_angle_1_deg 6.612 r_rigid_bond_restr 6.287 r_scangle_other 4.363
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 64.727 r_dihedral_angle_2_deg 35.48 r_dihedral_angle_4_deg 25.492 r_sphericity_bonded 14.124 r_dihedral_angle_3_deg 12.137 r_long_range_B_refined 7.119 r_long_range_B_other 6.749 r_dihedral_angle_1_deg 6.612 r_rigid_bond_restr 6.287 r_scangle_other 4.363 r_scbond_it 3.839 r_scbond_other 3.828 r_mcangle_other 2.693 r_angle_refined_deg 2.681 r_mcangle_it 2.644 r_mcbond_it 2.035 r_mcbond_other 2.022 r_angle_other_deg 1.587 r_chiral_restr 0.19 r_bond_refined_d 0.032 r_gen_planes_other 0.015 r_gen_planes_refined 0.014 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2049 Nucleic Acid Atoms Solvent Atoms 256 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing