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OleP mutant F84Q in complex with LCA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5MNS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 4.4 M sodium formate
Crystal Properties Matthews coefficient Solvent content 2.96 58.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 250.06 α = 90 b = 108.34 β = 129.95 c = 162.12 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2022-03-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1.0 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.777 90 99.7 0.996 11.3 5.1 83589
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.777 2.825 0.819
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.777 61.72 79540 4048 99.64 0.18503 0.1828 0.1871 0.22834 0.2328 RANDOM 65.167
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2 -0.18 -1.15 1.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.863 r_long_range_B_other 11.28 r_long_range_B_refined 11.279 r_dihedral_angle_2_deg 9.138 r_scangle_other 7.009 r_dihedral_angle_1_deg 6.401 r_mcangle_it 5.955 r_mcangle_other 5.955 r_scbond_it 4.291 r_scbond_other 4.268
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.863 r_long_range_B_other 11.28 r_long_range_B_refined 11.279 r_dihedral_angle_2_deg 9.138 r_scangle_other 7.009 r_dihedral_angle_1_deg 6.401 r_mcangle_it 5.955 r_mcangle_other 5.955 r_scbond_it 4.291 r_scbond_other 4.268 r_mcbond_it 3.725 r_mcbond_other 3.724 r_angle_refined_deg 1.602 r_angle_other_deg 0.532 r_chiral_restr 0.068 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_gen_planes_other 0.005 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18919 Nucleic Acid Atoms Solvent Atoms 184 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing