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NMR solution structure of RPRD2 CTD-interacting domain and pT4 RNAPII CTD peptide.
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.5 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1.5 mM pT4 CTD 90% H2O/10% D2O 100 mM 8 1 Pa 293.15 Bruker AVANCE III HD 600 2 2D 1H-13C HSQC aliphatic 0.5 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1.5 mM pT4 CTD 90% H2O/10% D2O 100 mM 8 1 Pa 293.15 Bruker AVANCE III HD 600 3 3D 1H-13C NOESY aliphatic 0.5 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1.5 mM pT4 CTD 90% H2O/10% D2O 100 mM 8 1 Pa 293.15 Bruker AVANCE III 850 4 3D 1H-15N NOESY 0.5 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1.5 mM pT4 CTD 90% H2O/10% D2O 100 mM 8 1 Pa 293.15 Bruker AVANCE III 850 5 3D CBCA(CO)NH 0.5 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1.5 mM pT4 CTD 90% H2O/10% D2O 100 mM 8 1 Pa 293.15 Bruker AVANCE III HD 600 6 3D HNCACB 0.5 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1.5 mM pT4 CTD 90% H2O/10% D2O 100 mM 8 1 Pa 293.15 Bruker AVANCE III HD 600 7 3D HBHA(CO)NH 0.5 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1.5 mM pT4 CTD 90% H2O/10% D2O 100 mM 8 1 Pa 293.15 Bruker AVANCE III HD 600 8 3D CC(CO)NH 0.5 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1.5 mM pT4 CTD 90% H2O/10% D2O 100 mM 8 1 Pa 293.15 Bruker AVANCE III HD 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III HD 600 3 Bruker AVANCE III 850
NMR Refinement Method Details Software simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 50 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 peak picking NMRFAM-SPARKY Lee W, Tonelli M, Markley JL 3 chemical shift assignment NMRFAM-SPARKY Lee W, Tonelli M, Markley JL 4 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 5 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman