☰ Navigation Tabs
Galectin-3 in Complex with Methyl 6-fluoro-N-acetyllactosaminide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5ODY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 291 150 mM KBr, 20% PEG MME 2000
Crystal Properties Matthews coefficient Solvent content 2.16 43.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.067 α = 90 b = 58.026 β = 90 c = 63.638 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2021-07-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.9184 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.069 42.93 99.2 0.089 0.999 11.85 6.56 116464
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.069 1.13 98.1 1.695 0.508 1.06 6.09
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.069 42.914 60809 1825 98.915 0.21 0.2091 0.2115 0.2323 0.2343 13.663
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.67 -0.42 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.467 r_dihedral_angle_3_deg 11.765 r_dihedral_angle_1_deg 7.489 r_dihedral_angle_2_deg 6.179 r_lrange_it 4.789 r_lrange_other 4.087 r_scangle_it 2.473 r_scangle_other 2.472 r_angle_refined_deg 1.918 r_scbond_it 1.675
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.467 r_dihedral_angle_3_deg 11.765 r_dihedral_angle_1_deg 7.489 r_dihedral_angle_2_deg 6.179 r_lrange_it 4.789 r_lrange_other 4.087 r_scangle_it 2.473 r_scangle_other 2.472 r_angle_refined_deg 1.918 r_scbond_it 1.675 r_scbond_other 1.664 r_mcangle_it 1.437 r_mcangle_other 1.437 r_mcbond_it 1.024 r_mcbond_other 1.018 r_angle_other_deg 0.659 r_nbd_refined 0.309 r_symmetry_nbd_other 0.196 r_nbd_other 0.191 r_nbtor_refined 0.173 r_symmetry_xyhbond_nbd_refined 0.153 r_xyhbond_nbd_refined 0.145 r_symmetry_nbd_refined 0.121 r_chiral_restr 0.103 r_symmetry_nbtor_other 0.091 r_xyhbond_nbd_other 0.037 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1108 Nucleic Acid Atoms Solvent Atoms 288 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling