9I41 | pdb_00009i41

Structure of anti-EV71 human monoclonal antibody 16-3-3C Fab

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3DGG

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		295	25% (w/v) PEG 3350, 0.1 M bis-Tris, pH 5.5

Crystal Properties
Matthews coefficient	Solvent content
2.48	50.36

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 77.826	α = 90
b = 156.587	β = 90
c = 78.461	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 6M		2018-04-11	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	0.9763	Diamond	I03

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.32	78.416	99.9	1	18.9	69.4		112322

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.32	1.354			0.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.32	78.416	110932	5587	98.695	0.144	0.1428	0.143	0.1738	0.174	19.504

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.296			0.035		0.261

RMS Deviations
Key	Refinement Restraint Deviation
r_lrange_it	18.73
r_lrange_other	18.728
r_dihedral_angle_6_deg	14.961
r_scangle_it	12.135
r_scangle_other	12.133
r_dihedral_angle_3_deg	11.229
r_mcangle_it	9.956
r_mcangle_other	9.956
r_dihedral_angle_2_deg	9.624
r_scbond_it	8.678
r_scbond_other	8.676
r_mcbond_it	7.428
r_mcbond_other	7.426
r_dihedral_angle_1_deg	7.16
r_rigid_bond_restr	4.546
r_angle_refined_deg	1.727
r_angle_other_deg	0.647
r_xyhbond_nbd_refined	0.255
r_nbd_refined	0.212
r_symmetry_nbd_refined	0.204
r_symmetry_nbd_other	0.203
r_nbtor_refined	0.175
r_nbd_other	0.167
r_symmetry_xyhbond_nbd_refined	0.153
r_chiral_restr	0.104
r_symmetry_xyhbond_nbd_other	0.092
r_symmetry_nbtor_other	0.091
r_bond_refined_d	0.011
r_gen_planes_refined	0.01
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3271
Nucleic Acid Atoms
Solvent Atoms	507
Heterogen Atoms	45

Software

Software
Software Name	Purpose
REFMAC	refinement
MOLREP	phasing