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BtuJ2 - DUF4465 domain containing protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 3.5 293 29% w/v PEG, 0.2M sodium citrate pH 3.5
Crystal Properties Matthews coefficient Solvent content 2.69 54.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.746 α = 90 b = 97.98 β = 90 c = 70.472 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2024-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.873 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 81.09 82 0.2 0.2 0.1 0.968 1.7 4.4 66258 13.12
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.7 0.381
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.73 70.472 15635 754 97.89 0.188 0.1849 0.1851 0.2609 0.2608 38.391
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 0.951 -0.531
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.829 r_dihedral_angle_3_deg 12.952 r_dihedral_angle_2_deg 11.282 r_lrange_it 9.555 r_lrange_other 9.555 r_dihedral_angle_1_deg 8.633 r_scangle_it 7.806 r_scangle_other 7.805 r_mcangle_other 6.918 r_mcangle_it 6.917
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.829 r_dihedral_angle_3_deg 12.952 r_dihedral_angle_2_deg 11.282 r_lrange_it 9.555 r_lrange_other 9.555 r_dihedral_angle_1_deg 8.633 r_scangle_it 7.806 r_scangle_other 7.805 r_mcangle_other 6.918 r_mcangle_it 6.917 r_scbond_it 5.311 r_scbond_other 5.31 r_mcbond_it 4.751 r_mcbond_other 4.751 r_angle_refined_deg 2.506 r_angle_other_deg 1.024 r_metal_ion_refined 0.315 r_nbd_refined 0.203 r_nbtor_refined 0.183 r_symmetry_nbd_other 0.178 r_nbd_other 0.173 r_symmetry_nbd_refined 0.168 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.116 r_symmetry_xyhbond_nbd_refined 0.108 r_ncsr_local_group_1 0.106 r_symmetry_nbtor_other 0.083 r_bond_refined_d 0.012 r_gen_planes_refined 0.011 r_gen_planes_other 0.004 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4069 Nucleic Acid Atoms Solvent Atoms 53 Heterogen Atoms 188
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction STARANISO data scaling PHASER phasing