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Human carbonic anhydrase I in complex with methyl 3-((2-hydroxy-5-sulfamoylphenyl)amino)propanoate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7Q0D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.1 M Tris-HCl (pH 8.5), 0.2 M sodium chloride and 24% PEG4000
Crystal Properties Matthews coefficient Solvent content 2.32 47.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.566 α = 90 b = 71.122 β = 90 c = 120.397 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-11-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 0.9763 PETRA III, EMBL c/o DESY P13 (MX1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 71.12 99.9 0.044 0.046 0.013 0.999 33.6 13.2 71521
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 99.8 0.394 0.41 0.112 0.979 13.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 61.24 64455 6979 99.78 0.21514 0.2124 0.2122 0.24023 0.2408 RANDOM 24.994
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.56 2.19 -1.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.146 r_dihedral_angle_4_deg 21.901 r_dihedral_angle_3_deg 14.16 r_dihedral_angle_1_deg 7.524 r_long_range_B_refined 4.964 r_scbond_it 2.999 r_mcangle_it 2.977 r_mcbond_it 2.23 r_angle_refined_deg 1.848 r_chiral_restr 0.126
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.146 r_dihedral_angle_4_deg 21.901 r_dihedral_angle_3_deg 14.16 r_dihedral_angle_1_deg 7.524 r_long_range_B_refined 4.964 r_scbond_it 2.999 r_mcangle_it 2.977 r_mcbond_it 2.23 r_angle_refined_deg 1.848 r_chiral_restr 0.126 r_gen_planes_refined 0.012 r_bond_refined_d 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4010 Nucleic Acid Atoms Solvent Atoms 356 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction MOLREP phasing Coot model building