Experiment: 9HVR

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6GS0

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	6.5	298	OtCE15A mixed 3:1 with reservoir containing 0.10 M Carboxylic acids (0.2M Sodium formate; 0.2M Ammonium acetate; 0.2M Sodium citrate tribasic dihydrate; 0.2M Potassium sodium tartrate tetrahydrate; 0.2M Sodium oxamate), 0.1 M Buffer system 1, pH 6.5 (Imidazole; MES monohydrate (acid)), 37.50 % v/v, Precipitant Mix 4 (25% v/v MPD; 25% PEG 1000; 25% w/v PEG 3350).OtCE15A mixed 3:1 with reservoir containing 0.10 M Carboxylic acids (0.2M Sodium formate; 0.2M Ammonium acetate; 0.2M Sodium citrate tribasic dihydrate; 0.2M Potassium sodium tartrate tetrahydrate; 0.2M Sodium oxamate), 0.1 M Buffer system 1, pH 6.5 (Imidazole; MES monohydrate (acid)), 37.50 % v/v, Precipitant Mix 4 (25% v/v MPD; 25% PEG 1000; 25% w/v PEG 3350). Glycerol used as cryoprotectant.

Crystal Properties
Matthews coefficient	Solvent content
2.18	43.49

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 9M		2022-09-23	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID30B	0.88560	ESRF	ID30B

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.39	58.561	91.1	0.081	0.082	0.027	0.998	14	8.2		63897

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.39	1.43	43.9		0.643	0.778	0.428	0.577	1.6	2.8

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.392	58.561	63897	3111	82.764	0.155	0.154	0.1538	0.1697	0.1697	15.369

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.066			0.035		0.03

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.221
r_dihedral_angle_3_deg	12.357
r_dihedral_angle_1_deg	6.586
r_dihedral_angle_2_deg	5.868
r_lrange_it	4.61
r_lrange_other	4.592
r_scangle_it	3.837
r_scangle_other	3.826
r_scbond_it	2.615
r_scbond_other	2.494

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.221
r_dihedral_angle_3_deg	12.357
r_dihedral_angle_1_deg	6.586
r_dihedral_angle_2_deg	5.868
r_lrange_it	4.61
r_lrange_other	4.592
r_scangle_it	3.837
r_scangle_other	3.826
r_scbond_it	2.615
r_scbond_other	2.494
r_mcangle_it	2.197
r_mcangle_other	2.196
r_angle_refined_deg	1.915
r_mcbond_it	1.495
r_mcbond_other	1.492
r_angle_other_deg	0.67
r_nbd_refined	0.226
r_symmetry_nbd_other	0.191
r_nbtor_refined	0.189
r_nbd_other	0.182
r_symmetry_nbd_refined	0.159
r_symmetry_xyhbond_nbd_refined	0.104
r_chiral_restr	0.099
r_xyhbond_nbd_refined	0.098
r_metal_ion_refined	0.087
r_symmetry_nbtor_other	0.084
r_bond_refined_d	0.011
r_gen_planes_refined	0.01
r_bond_other_d	0.001
r_gen_planes_other	0.001