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Crystal structure of fascin in complex with compound 4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other unreleased crystal structure
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 292 18-22% PEG 8000, 100-130 mM MgAc2, 100 mM citric acid pH 5.0
Crystal Properties Matthews coefficient Solvent content 2.39 48.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.25 α = 90 b = 88.06 β = 90 c = 98.38 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2015-02-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9163 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 49.73 99.8 0.172 0.205 0.079 10.8 6.5 37664 25.519
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.97 2.02 99.9 1.958 2.345 0.893 0.9 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.97 49.73 35773 1833 99.67 0.2298 0.2278 0.2684 0.2317 RANDOM 37.323
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.04 -1.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.308 r_dihedral_angle_4_deg 17.381 r_dihedral_angle_3_deg 14.598 r_dihedral_angle_1_deg 4.612 r_angle_other_deg 2.511 r_mcangle_it 1.918 r_angle_refined_deg 1.753 r_mcbond_it 1.152 r_mcbond_other 1.151 r_chiral_restr 0.122
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.308 r_dihedral_angle_4_deg 17.381 r_dihedral_angle_3_deg 14.598 r_dihedral_angle_1_deg 4.612 r_angle_other_deg 2.511 r_mcangle_it 1.918 r_angle_refined_deg 1.753 r_mcbond_it 1.152 r_mcbond_other 1.151 r_chiral_restr 0.122 r_bond_other_d 0.036 r_bond_refined_d 0.016 r_gen_planes_other 0.009 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3784 Nucleic Acid Atoms Solvent Atoms 193 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement xia2 data scaling PDB_EXTRACT data extraction XDS data reduction