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Human MTH1 in complex with stanozolol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ZR0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 22 % PEG6000, 0.1 M sodium acetate pH 4.0, 0.2 M LiSO4
Crystal Properties Matthews coefficient Solvent content 2.03 39.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.526 α = 90 b = 59.71 β = 90 c = 66.875 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2014-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.987 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 44.54 99.5 1 18.9 7.1 29373
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 0.666
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.401 44.54 29330 1512 99.555 0.15 0.1476 0.1533 0.1922 0.194 18.893
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.039 0.141 -0.179
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 19.326 r_lrange_other 19.242 r_dihedral_angle_6_deg 14.228 r_dihedral_angle_3_deg 11.869 r_scangle_it 11.171 r_scangle_other 10.85 r_scbond_it 7.699 r_dihedral_angle_1_deg 7.613 r_scbond_other 7.472 r_dihedral_angle_2_deg 7.195
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 19.326 r_lrange_other 19.242 r_dihedral_angle_6_deg 14.228 r_dihedral_angle_3_deg 11.869 r_scangle_it 11.171 r_scangle_other 10.85 r_scbond_it 7.699 r_dihedral_angle_1_deg 7.613 r_scbond_other 7.472 r_dihedral_angle_2_deg 7.195 r_mcangle_it 7.192 r_mcangle_other 7.191 r_mcbond_it 5.011 r_mcbond_other 4.996 r_rigid_bond_restr 4.405 r_angle_refined_deg 2.067 r_angle_other_deg 0.739 r_chiral_restr_other 0.739 r_nbd_refined 0.266 r_xyhbond_nbd_refined 0.255 r_symmetry_xyhbond_nbd_refined 0.247 r_symmetry_nbd_refined 0.24 r_symmetry_nbd_other 0.218 r_nbd_other 0.203 r_nbtor_refined 0.19 r_chiral_restr 0.102 r_symmetry_nbtor_other 0.092 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1254 Nucleic Acid Atoms Solvent Atoms 103 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing