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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog m5(11,6)-(E)-OH
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 18% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5, 10% glycol
Crystal Properties Matthews coefficient Solvent content 2.43 49.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.744 α = 90 b = 48.744 β = 90 c = 198.119 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2024-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 42.21 100 0.056 0.061 0.024 0.999 18.2 11.9 45126
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.53 100 1.2 1.306 0.512 0.779 2 12.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 42.21 45044 2351 99.98 0.208 0.2062 0.2063 0.2395 0.2394 31.383
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.6 -0.3 -0.6 1.946
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.039 r_dihedral_angle_6_deg 16.323 r_dihedral_angle_3_deg 11.23 r_dihedral_angle_1_deg 7.717 r_lrange_it 5.663 r_lrange_other 5.649 r_scangle_it 3.753 r_scangle_other 3.751 r_scbond_it 2.692 r_scbond_other 2.691
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.039 r_dihedral_angle_6_deg 16.323 r_dihedral_angle_3_deg 11.23 r_dihedral_angle_1_deg 7.717 r_lrange_it 5.663 r_lrange_other 5.649 r_scangle_it 3.753 r_scangle_other 3.751 r_scbond_it 2.692 r_scbond_other 2.691 r_mcangle_other 2.354 r_mcangle_it 2.353 r_angle_refined_deg 2.205 r_mcbond_it 1.755 r_mcbond_other 1.755 r_dihedral_angle_other_2_deg 1.15 r_angle_other_deg 0.752 r_symmetry_xyhbond_nbd_refined 0.236 r_nbd_refined 0.208 r_xyhbond_nbd_refined 0.203 r_symmetry_nbd_other 0.193 r_nbtor_refined 0.182 r_nbd_other 0.171 r_xyhbond_nbd_other 0.12 r_chiral_restr 0.118 r_symmetry_xyhbond_nbd_other 0.104 r_symmetry_nbtor_other 0.09 r_ncsr_local_group_1 0.09 r_symmetry_nbd_refined 0.084 r_bond_refined_d 0.014 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1890 Nucleic Acid Atoms Solvent Atoms 194 Heterogen Atoms 80
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing