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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog m5(10,7)-(E)-OH
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 18% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.25 45.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.157 α = 90 b = 48.157 β = 90 c = 188.036 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 9M 2023-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.873129 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 188.04 99.9 0.078 0.09 0.044 0.999 11.3 7.3 17996
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.05 99.9 1.37 1.562 0.737 0.615 1.5 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 62.757 17932 883 99.794 0.218 0.2152 0.2161 0.2611 0.2619 44.646
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.715 -0.858 -1.715 5.564
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.605 r_dihedral_angle_3_deg 14.82 r_dihedral_angle_6_deg 14.217 r_dihedral_angle_1_deg 8.992 r_dihedral_angle_other_2_deg 8.975 r_lrange_it 7.725 r_lrange_other 7.723 r_scangle_it 6.099 r_scangle_other 6.097 r_mcangle_it 5.195
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.605 r_dihedral_angle_3_deg 14.82 r_dihedral_angle_6_deg 14.217 r_dihedral_angle_1_deg 8.992 r_dihedral_angle_other_2_deg 8.975 r_lrange_it 7.725 r_lrange_other 7.723 r_scangle_it 6.099 r_scangle_other 6.097 r_mcangle_it 5.195 r_mcangle_other 5.193 r_scbond_it 4.531 r_scbond_other 4.528 r_mcbond_it 4.072 r_mcbond_other 4.066 r_angle_refined_deg 2.625 r_angle_other_deg 0.895 r_symmetry_nbd_refined 0.309 r_nbd_refined 0.213 r_symmetry_nbd_other 0.204 r_nbtor_refined 0.192 r_nbd_other 0.18 r_chiral_restr 0.132 r_ncsr_local_group_1 0.117 r_xyhbond_nbd_refined 0.115 r_symmetry_nbtor_other 0.108 r_symmetry_xyhbond_nbd_refined 0.068 r_bond_refined_d 0.016 r_gen_planes_refined 0.014 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1819 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing