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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog m5(2,4)-(E)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 18% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.36 47.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.559 α = 90 b = 48.559 β = 90 c = 194.531 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2023-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 48.63 100 0.167 0.184 0.077 0.995 9.9 10.2 9922
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.6 100 0.571 0.627 0.259 0.941 3.8 10.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 41.138 9874 478 99.929 0.22 0.2171 0.2151 0.2754 0.2708 37.405
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.949 -0.975 -1.949 6.324
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.957 r_dihedral_angle_3_deg 15.625 r_dihedral_angle_6_deg 15.147 r_dihedral_angle_1_deg 9.759 r_lrange_it 5.13 r_lrange_other 5.094 r_scangle_it 3.375 r_scangle_other 3.374 r_mcangle_it 3.056 r_mcangle_other 3.055
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.957 r_dihedral_angle_3_deg 15.625 r_dihedral_angle_6_deg 15.147 r_dihedral_angle_1_deg 9.759 r_lrange_it 5.13 r_lrange_other 5.094 r_scangle_it 3.375 r_scangle_other 3.374 r_mcangle_it 3.056 r_mcangle_other 3.055 r_scbond_it 2.072 r_scbond_other 2.071 r_angle_refined_deg 2.032 r_mcbond_it 1.92 r_mcbond_other 1.919 r_angle_other_deg 0.647 r_xyhbond_nbd_other 0.254 r_symmetry_xyhbond_nbd_refined 0.251 r_nbd_refined 0.226 r_symmetry_nbd_other 0.203 r_nbtor_refined 0.188 r_symmetry_nbd_refined 0.182 r_nbd_other 0.17 r_xyhbond_nbd_refined 0.148 r_symmetry_nbtor_other 0.097 r_chiral_restr 0.084 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1870 Nucleic Acid Atoms Solvent Atoms 41 Heterogen Atoms 76
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing