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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog p5(2,1)-Diol-II
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 24% PEG3350, 0.2M ammonium thiocyanate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.29 46.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.191 α = 90 b = 48.191 β = 90 c = 191.561 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2022-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 47.89 100 0.048 0.053 0.022 0.999 24 10.4 18383
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.05 100 0.527 0.579 0.238 0.918 4.6 11.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 41.769 18324 867 99.935 0.221 0.2187 0.219 0.2709 0.27 49.966
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.547 -0.273 -0.547 1.774
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.037 r_dihedral_angle_6_deg 16.963 r_dihedral_angle_3_deg 13.325 r_dihedral_angle_1_deg 8.337 r_lrange_it 7.281 r_lrange_other 7.279 r_scangle_it 5.439 r_scangle_other 5.437 r_mcangle_it 4.479 r_mcangle_other 4.478
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.037 r_dihedral_angle_6_deg 16.963 r_dihedral_angle_3_deg 13.325 r_dihedral_angle_1_deg 8.337 r_lrange_it 7.281 r_lrange_other 7.279 r_scangle_it 5.439 r_scangle_other 5.437 r_mcangle_it 4.479 r_mcangle_other 4.478 r_scbond_it 4.153 r_scbond_other 4.151 r_mcbond_it 3.56 r_mcbond_other 3.54 r_angle_refined_deg 2.43 r_angle_other_deg 0.797 r_symmetry_xyhbond_nbd_refined 0.308 r_nbd_refined 0.214 r_symmetry_xyhbond_nbd_other 0.212 r_symmetry_nbd_other 0.211 r_nbd_other 0.192 r_nbtor_refined 0.19 r_xyhbond_nbd_refined 0.176 r_symmetry_nbd_refined 0.168 r_ncsr_local_group_1 0.122 r_chiral_restr 0.121 r_symmetry_nbtor_other 0.097 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1851 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms 72
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing