☰ Navigation Tabs
The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog p5(1,4)-(E)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 20% PEG3350, 0.2M ammonium thiocyanate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.39 48.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.806 α = 90 b = 48.806 β = 90 c = 194.627 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2022-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 48.66 100 0.039 0.043 0.018 0.999 35 10.4 12763
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.38 100 0.159 0.176 0.074 0.992 12.2 10.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 41.339 12706 659 99.921 0.241 0.2387 0.2379 0.2762 0.2757 49.844
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.751 -0.375 -0.751 2.435
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.047 r_dihedral_angle_3_deg 13.541 r_dihedral_angle_2_deg 8.492 r_dihedral_angle_1_deg 8.373 r_lrange_it 6.457 r_lrange_other 6.446 r_scangle_it 4.152 r_scangle_other 4.151 r_mcangle_it 3.939 r_mcangle_other 3.937
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.047 r_dihedral_angle_3_deg 13.541 r_dihedral_angle_2_deg 8.492 r_dihedral_angle_1_deg 8.373 r_lrange_it 6.457 r_lrange_other 6.446 r_scangle_it 4.152 r_scangle_other 4.151 r_mcangle_it 3.939 r_mcangle_other 3.937 r_scbond_it 2.759 r_scbond_other 2.758 r_mcbond_it 2.63 r_mcbond_other 2.63 r_angle_refined_deg 2.2 r_chiral_restr_other 1.829 r_angle_other_deg 1.363 r_symmetry_nbd_refined 0.273 r_nbd_refined 0.223 r_symmetry_nbd_other 0.203 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.179 r_nbd_other 0.159 r_ncsr_local_group_1 0.108 r_symmetry_nbtor_other 0.094 r_chiral_restr 0.093 r_symmetry_xyhbond_nbd_other 0.024 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.007 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1798 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing