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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 12f/o
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 20% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5, 10% glycol
Crystal Properties Matthews coefficient Solvent content 2.42 49.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.028 α = 90 b = 49.028 β = 90 c = 195.666 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2024-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 48.92 100 0.054 0.058 0.021 0.999 23.1 14.8 26431
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.84 99.9 1.186 1.265 0.438 0.784 2.5 15.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 41.528 26359 1327 99.958 0.232 0.2299 0.276 0.2768 41.035
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.282 -0.141 -0.282 0.913
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.306 r_dihedral_angle_6_deg 16.308 r_dihedral_angle_3_deg 11.802 r_dihedral_angle_1_deg 8.434 r_lrange_it 5.81 r_lrange_other 5.804 r_scangle_it 4.423 r_scangle_other 4.422 r_mcangle_it 3.594 r_mcangle_other 3.593
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.306 r_dihedral_angle_6_deg 16.308 r_dihedral_angle_3_deg 11.802 r_dihedral_angle_1_deg 8.434 r_lrange_it 5.81 r_lrange_other 5.804 r_scangle_it 4.423 r_scangle_other 4.422 r_mcangle_it 3.594 r_mcangle_other 3.593 r_scbond_it 3.387 r_scbond_other 3.386 r_mcbond_it 2.952 r_mcbond_other 2.951 r_angle_refined_deg 2.217 r_angle_other_deg 0.748 r_symmetry_nbd_refined 0.241 r_nbd_refined 0.208 r_symmetry_nbd_other 0.198 r_nbd_other 0.183 r_nbtor_refined 0.181 r_ncsr_local_group_1 0.12 r_chiral_restr 0.119 r_xyhbond_nbd_refined 0.107 r_symmetry_nbtor_other 0.092 r_symmetry_xyhbond_nbd_refined 0.061 r_bond_refined_d 0.014 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1867 Nucleic Acid Atoms Solvent Atoms 71 Heterogen Atoms 84
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing